rs30012813 SNP Detail

Summary

• ID
  rs30012813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATGACC TTACCAAAAG
  ACAATTATTA TACACTTCCC AAGCAGCTGA CTTTTCATCT TACATTAAGA ATTTATAACT
  TAATGCTCTA TATCTGAACA AACACAGCCA ACGGTGAAAG CCTGGGGCGT GGAGAAACCA
  TGATATAGTT GCCTAAAACA AACTGCCATG TTTAAATAAA TCAACCAAAC TAATCACAAG
  Y
  AAAAGACACT AAGGCTGGCT TTACTCAGGT CTTTTGAATC CTGTGTTTCA CAAAGGCACA
  AGAGTTGCTT TCCTAAATTT AAGGAAAAAG AAGTCAGTAT TTCACTGACT TGATTTCCAG
  CTCTGTGTGA CATGAGCCAA GCCAACAGAG AGCGAGGTAA TAACATGGTA AGGAACAGAC
  TCCCATTCAC CAAGTACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45387247	mCV23994014	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135872276	ENSMUSSNP1455864	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957247	CHEV_3_127531879	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30012813					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622610 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	594 bp downstream
Rr584870	regulatory region 584870	1445 bp distal
Rr584871	regulatory region 584871	1258 bp proximal
Rr584872	regulatory region 584872	1848 bp proximal