rs30012658 SNP Detail

Summary

• ID
  rs30012658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGTAAAG AAGCATTGAA
  GAACAGCATT TAAAGGCTGG GTTGTGATCA GTTGTCCGTC AAGAGCCCTG TTGGTGTCAG
  GGCTTCAGAG TCCCATTGTA ATTTGAGTGG GGAAGCAGAA GTGACAAGCC CTTAGATTGA
  ACTTCGTGTT TGTGTTTTAG TTTGTGTTTG TTTGTTTTTA AGTTCTCATG TGCTCATGAT
  K
  GCTCCTCTGC CTCCATGCCT TAGGGCTGCC ATTCAAAGAT GGCAAAATGC ATATACGATG
  CCCTTTCTCT GATGCCACCA GACTAGGGTT TTCCCAGTCT TGTCTCTTTC TTTATCTTTT
  CTTTCATCTT AGCTTTATTT AGAAAATATA AATATGTCTT GGCTGTTTCT TATGAAACTG
  GTGCTCTTTA GTCTTTAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45384966	mCV23466509	ABI	CRAMUS_MOUSE	f	SNP		G	G					T
ss46955833	NES10677186	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T	G		G	T	T	T		G	T	T	G		T
ss135837321	ENSMUSSNP4511749	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
ss320946773	CHEV_3_126326752	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30012658					SNP	G	G	G	T	G	T	G	T	G	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955833	NES10677186	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm64675	predicted gene, 64675			319 bp upstream
Rr584659	regulatory region 584659			1367 bp proximal