rs30012418 SNP Detail

Summary

• ID
  rs30012418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144925495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACAATA TGTGAGTGGA
  TTGGCTCACA GGAAATTCAC ATGTTTGTTG TTATAAACAG TTCGGCAATC TGCAGTCACA
  TCTGATCTTA CATATGGCAA TACAAGCCTG TTATTATCCT TTAGTGTTGA TGAATGAACT
  ACATAAATAA GAGAATATGG TGAATTGGCC CACATGGTTC TTTCTATGCA AGAATGTTGG
  Y
  ATATTAGTTA GTGTTATGTT TCCCTGGCAT AAAGCAGGTT GGAAGAGATA AGGTTCATTT
  TAGCTTACAG CTCCAGAGTA GATATGGTTC ATCATGCAGC AGGCAAAGAA GACATGGCTA
  TCAAAGTGGG TAGCTGGATG ATCACATTCC ATCCACACAC AGAAAGCAGA GAAACAGAAC
  AGGGAGTTGG ACCACATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45387089	mCV23564127	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss61094895	NES16604304	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	T	T	T		T		C	T	T		C
ss136035825	ENSMUSSNP1305656	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T					T
ss321007366	CHEV_3_144882698	CHEVERUD	SCREENING_POP	f	SNP													T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30012418					SNP	C	C	C	C	C	C	C	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094895	NES16604304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144925495 () rs orientation: forward

Symbol	Name	Function Class
Rr586766	regulatory region 586766	270 bp proximal