rs30012365 SNP Detail

Summary

• ID
  rs30012365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145570257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCAAAAAT GTCCCTGTGA TTTTATAGGT AGCCATATTT
  TAAAAACAAT GAAGGTGGAA AAACCCTGAA TGTGTTTGGA TCGTACATGT TTTTTTTCAC
  Y
  GTCTGGAATT TCCTGTAGGA ACACTACAAC AATAGCAAAG CCAAAGAACA AGCAAAAAAT
  GCACTCGTAT CAACAGAGAG ACTGCAGCGC AAAAATAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45385758	mCV23542574	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss51669599	NES14637256	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T	T		C	C	C	C		C
ss136040054	ENSMUSSNP1771951	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321008842	CHEV_3_145527466	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30012365					SNP	C	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51669599	NES14637256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145570257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddah1	dimethylarginine dimethylaminohydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr586854	regulatory region 586854			within coordinates
Rr586855	regulatory region 586855			236 bp proximal