rs30010732 SNP Detail

Summary

• ID
  rs30010732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60525829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTTTTGCCTT AAATATAAAT
  R
  AAGGCAAGTT CTAACTTCAC TGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45384883	mCV23104478	ABI	CRAMUS_MOUSE	f	SNP		G	A			A	A
ss46984767	NES10791718	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G			G	G		G	G		A
ss135219912	ENSMUSSNP4961928	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
ss320786790	CHEV_3_60422330	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30010732					SNP	G	G	A	A	G	A	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46984767	NES10791718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60525829 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr375058	regulatory region 375058			58 bp downstream
Rr577444	regulatory region 577444			1990 bp distal
Rr577445	regulatory region 577445			1670 bp proximal
Tssr29316	transcription start site region 29316			1292 bp downstream
Tssr29317	transcription start site region 29317			1071 bp downstream
Tssr29318	transcription start site region 29318			1005 bp downstream
Tssr29319	transcription start site region 29319			936 bp downstream
Tssr29320	transcription start site region 29320			204 bp downstream