rs30008059 SNP Detail

Summary

• ID
  rs30008059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125199701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATCTCA TGGTGAGAAC
  CAGCATTCCC CCAAACATTA GAATGTTTAA TAAGAAAAGT AACTGTGTCA TTTATGTTTA
  TCTCTGGACA GAAATAGATA TTTGAGTATA CTATGATTTT TGCTGTTTTT CCATAGAGAA
  TTCTCTGGCA ATCTATAGCA TGAAAGTCGT CCTTGATGGA AAATACAGAT AAAAATTCTG
  R
  TGTAACTCTT TTATAAAAGA AAAGCTTTGG ATAATTTTAT TATATTTTAT TTTTAAGAAA
  TCAATGAGAA AGCCATCTGT ACATAATAAT CTAGATCATT CTTTTGCTTT TTCCTGAAAA
  TAAAAAAAAT TGCATGTTCA TATAGAATGC ATGTATATAC ATTCACCTGA GAAGCAAGTA
  TCTTAGATTT CATCAGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45385622	mCV24033288	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss135807848	ENSMUSSNP4289049	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320936171	CHEV_3_125108970	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30008059					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125199701 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	1966 bp distal
Rr584609	regulatory region 584609	1348 bp distal
Tssr31558	transcription start site region 31558	1921 bp downstream
Tssr31559	transcription start site region 31559	1712 bp downstream