rs30007828 SNP Detail

Summary

• ID
  rs30007828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75769244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCCAAG AGCCCTGCCA
  ATAAGAAAAC CAGAATATGC CTCAGTGCTT AGAAGCCCTT ATGGCTCTTG TAGAGGACCT
  AATTTCAGGG TGCAGCCCTC ACAAGGCAGC TTACAACCTA CTGAACCTCC AGTTCCAACG
  GATCTGGTGC CCTCTTCTGG CCTCTGGCGG CACTACAGGC ACAGGGTACA TAGACATACG
  Y
  AGGAAAACCC AGATACAAAA CAAAAACATA TTTTATTTTT TTAAAAAGTC TTCTGTAAAA
  AGAAAAGAAA AATCAATTGC AGTTTACAAA ACATTTGTAA CTACCAAGCT ACTTAGTGTT
  CGCCAGAAGC CACATGAAAA TCAACATGAG GTCAAGAACT TCCCAGTCTT TTCCATGTTA
  GCATCATCAC TAAACAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45384567	mCV23595034	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135331369	ENSMUSSNP4498308	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30007828					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75769244 () rs orientation: forward

Symbol	Name	Function Class
Rr397723	regulatory region 397723	within coordinates
Rr578364	regulatory region 578364	680 bp distal
Rr578365	regulatory region 578365	within coordinates
Rr578366	regulatory region 578366	26 bp distal