rs30007616 SNP Detail

Summary

• ID
  rs30007616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36744133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGGTAC TCACGCGTCG
  GGCCCCGGGG ACGGCGGCGC GCGCGGGCAG GGCGGCTCCA GCCCGCCGTT GACGCCCCTC
  CAGCCCCGGC GGCGGCGCTG CGACTCGCCT CCCTCGGCCT CGCCATCCTC CTCCTCCTCC
  GGAGCGGGCA AGGTCACCCT CGCGGGCTCC CGGCACTTCT TGACCTTGGT GGACATAGCG
  R
  CCAAGCTCCC TGCCGCCCGC AGTCAGCAGC CCAGCTGCCC CGGGTCAAGC ACCGGGCCCG
  CGGAGCTGGG GACGCCCGGG CGGAGCGCGC GACCTGCAGC GGAGCTTGGG GTCCGCGGCC
  GCGCTGCCGG CTGTGCGCGG TCTGCCGGCC CGACAGCATC GCGGCGAGAC GGCGCGGTTT
  CCCTGCGAGG AGAGGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45385412	mCV22651663	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss320704375	CHEV_3_36588906	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30007616					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36744133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	within coordinates
Rr575390	regulatory region 575390	937 bp distal
Rr575391	regulatory region 575391	173 bp proximal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	mRNA-UTR
Tssr33044	transcription start site region 33044	134 bp downstream