rs30006860 SNP Detail

Summary

• ID
  rs30006860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82960988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA GGCCACATTC TACCTCACTG
  R
  TCATTGCTCA ACAGGCAAGG TACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45385132	mCV23186900	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320820923	CHEV_3_82857603	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs30006860					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82960988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	1364 bp proximal
Plrg1	pleiotropic regulator 1	1857 bp upstream
Rr397732	regulatory region 397732	1568 bp upstream
Rr578826	regulatory region 578826	within coordinates
Rr578827	regulatory region 578827	216 bp proximal
Rr578828	regulatory region 578828	1351 bp proximal
Rr578829	regulatory region 578829	1760 bp proximal
Rr578830	regulatory region 578830	1885 bp proximal
Tssr29713	transcription start site region 29713	1835 bp upstream
Tssr29714	transcription start site region 29714	1894 bp upstream
Tssr29715	transcription start site region 29715	1913 bp upstream