rs30006100 SNP Detail

Summary

• ID
  rs30006100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88848251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GGATCCGTTG CAAGCGGCCC
  Y
  TTCTTCTTCA GTTCTTACCC TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45386193	mCV23077028	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135473084	ENSMUSSNP488176	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320836366	CHEV_3_88744866	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30006100					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88848251 () rs orientation: forward

Symbol	Name	Function Class
Dap3	death associated protein 3	Intron
Rr579925	regulatory region 579925	1690 bp distal
Rr579926	regulatory region 579926	748 bp distal
Rr579927	regulatory region 579927	1056 bp distal
Rr579928	regulatory region 579928	952 bp distal