rs30006044 SNP Detail

Summary

• ID
  rs30006044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152060622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAGGGT GAGTGTCTTC
  TGCTTTATGT ATTTGTTTTG TAAAGATTGA GCTGGCTGGG GGGGGCACAC TGGCTGGAGG
  GGGGCACACT GGAGACAGAG GCAGAAGAAT CTCTGTGTTC AAGGCCAGCC TGGCTTACAT
  AGCGGGTTCC AGCCCAGCCA AAACTGCATA ATGAAACCTT GTCCCAAAAC ACAAACAAAA
  R
  ATTGATTTAT TTTTGTTTTA TGATTATGAA TGCATGTATA TATGTGTATC ATATGTATTC
  CTGGTTCATG GAGTGACCAG AGGGATGCAT AGGATTCCCT GAAAAATGCG TTAATTGGCA
  GATGCTGGGA ACTGAACTTG GGCCTTCTGG AAGAGCAGGC AGTGTTCTTA AATGTTGAGC
  CGTCTCTCCA GTGCTCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45385595	mCV25024535	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss321028742	CHEV_3_152017949	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30006044					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152060622 () rs orientation: forward

Symbol	Name	Function Class
Rr587537	regulatory region 587537	1978 bp distal
Rr587538	regulatory region 587538	256 bp proximal
Rr587539	regulatory region 587539	1848 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron