rs30005850 SNP Detail

Summary

• ID
  rs30005850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57376383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGCTTC TTCCTTAAAG
  GATGGACTGT AGCTGGTAAG ACACTCTTTT CTCCTTCAAG CTGCTTCAGG TATTTTATCA
  CGGCAACAGA AAGGCTAACT ATTGTGGTCT ATTCACAGGG CACCACAAGC CCTGTCTAAA
  ACAGGCCTCT GATTTCTCCA CATCTCAGTA CTTCAGGTCT CTCTTCCTCC AAACACATCT
  W
  ACCCAGCTTT AGTATTTAGG TTATACAGCC ACAGTGATGT AAGTTAAAAT AGCACCAAAC
  CTGCCCAATC TAGGCCTATA GCTTGTAAAT AAAATACCAG GATTGTGTGT CTTTTACACA
  GACTAGCTAG AATAGAAAAA CACCAATTAC AAGATTCTAG ACAGACAATC ACAAAGAATA
  GACAATGGAC AGGCATTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45385122	mCV22290761	ABI	CRAMUS_MOUSE	f	SNP		A						T
ss46977309	NES10795625	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	T	T	T	T		T	T	T
ss135201498	ENSMUSSNP44961	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30005850					SNP	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977309	NES10795625	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57376383 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	1159 bp proximal
Rr375020	regulatory region 375020	1116 bp upstream
Rr577104	regulatory region 577104	1167 bp proximal
Rr577105	regulatory region 577105	1247 bp proximal
Rr577106	regulatory region 577106	1418 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron