rs30004947 SNP Detail

Summary

• ID
  rs30004947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141985892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCATGC TAGGAGTATA
  TTACTTAACC TTAGTAAAGT TCTTTATCTT CAAACAGTAC AAATATATTG CCTTTCTTCC
  AGGGTTATAA CAAGCATGAA CTAAAGTACT TGTACAATCC TCAACACTGA GTTAAGTGTT
  GAAAATGGCA CTGATAATTG TATCTATGTT CTAAGTGTGT AGTTTAATGG TAATGATATT
  R
  TTAGTGAATA TGGTTACTAA ATTAATACTT CATGTAACAA TTTACTTATA AGTATAGTTT
  CAGTTCTGGA TTTTAATCTG AGGTACAATT TTAAATTACA ATTATTTAAA TTAAGTTAAA
  AGTCCTATGA AGATTATTGT AAGCTAACAT GTTTTAATTT AGGTTGTATT TTTTTATACA
  AGGGTTTATA TAAATTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45385108	mCV24096242	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss136011745	ENSMUSSNP3807550	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320999932	CHEV_3_141943095	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30004947					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141985892 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr586407	regulatory region 586407	294 bp proximal