rs30004487 SNP Detail

Summary

• ID
  rs30004487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69032699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA AATGGTTCAG TTCTAAGCAC
  Y
  CACATGGCAG CTCCCAGCTG GAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45385001	mCV24616006	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss135265140	ENSMUSSNP1860256	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss320791952	CHEV_3_68929288	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30004487					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69032699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	546 bp proximal
Kpna4	karyopherin subunit alpha 4	Intron
Rr397714	regulatory region 397714	1644 bp upstream
Rr578129	regulatory region 578129	585 bp proximal
Rr578130	regulatory region 578130	669 bp proximal
Rr578131	regulatory region 578131	817 bp proximal
Rr578132	regulatory region 578132	1716 bp proximal
Tssr902	transcription start site region 902	1661 bp downstream
Tssr33536	transcription start site region 33536	within coordinates
Tssr33537	transcription start site region 33537	1475 bp downstream
Tssr33538	transcription start site region 33538	1670 bp downstream
Tssr33539	transcription start site region 33539	1701 bp downstream
Tssr33540	transcription start site region 33540	1732 bp downstream