rs30001145 SNP Detail

Summary

• ID
  rs30001145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCAGGG GCTAAGAGAA
  GAGGAGATGC AATCAAATGT GTTTCTCTCG TGGTGTCAGT GCCTCCCAGG GCTCACTCAG
  CTTAGACAAG GCCAATGGCC TTTTGTGACT AGATGACATT TCTCAGTGGA AAACACTTTT
  TTTTTTTTTT TCCTTGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACA
  Y
  TGTAGACCAG GCTGGCCTCA AACTCAGAAA TCCACCTGCC TCTGCCTCCC AAGTGCTGGG
  TTTAAAGGTG TGCACTGGCA CCACCACCCG GCTGGAAAAC ACTTTTGATC AAGGTAAAAT
  ACCGACTCAC CGAGCTGCAG GGAGGGAGAC AGGCCAGCAT CTACTACTGC ACCATTCGTA
  CCATCCGCAG GCAGACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45384218	mCV25348945	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135887692	ENSMUSSNP3903005	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30001145					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			721 bp distal
Rr585060	regulatory region 585060			187 bp distal
Rr585061	regulatory region 585061			476 bp proximal
Rr585062	regulatory region 585062			868 bp proximal
Rr585063	regulatory region 585063			1479 bp proximal