rs30000185 SNP Detail

Summary

• ID
  rs30000185
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151795799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCGGGA TGCATTGAGT
  ACACCCCCTG ACAAGTGGAT CACCCCTGAA GGAGAAACTT TTTGGGTTTT AGTCAGTACA
  GTTAAAGGTA GTTTTATTTG GAGTTTAATA TTGATGACAG CCTTTCAGAT ATTCCTTATG
  TATTAAGTGA AAAAACAAAA ACAAAATACC TTGTTCATTC AGTCCAAACA ACAAAGTTAC
  K
  CATTAGCTGG GACCAAATCA ATTAAACCAT GAGATCACTT ACACCAGCAA AGGCATTGTA
  AGATTGGTAA AGCCAGTTCT TACTTGCCGA GAAATGGTCC CAATCTTTGA TTTCTTTAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAACT TTTAAGCCAT CCTGGGAAGA
  ACACATAGAG CAATGAGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45384206	mCV24211061	ABI	CRAMUS_MOUSE	f	SNP		T	G		G
ss51060812	NES13430473	PERLEGEN	MM_PANEL2	f	SNP	T	T		T	G	G		G	T
ss321027981	CHEV_3_151753126	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30000185					SNP	T	T	G	T	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060812	NES13430473	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151795799 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	640 bp distal
Rr587444	regulatory region 587444	736 bp distal