rs29996413 SNP Detail

Summary

• ID
  rs29996413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGTCTGC TTGAATGTAA GAGAAGAATG CATGTGCACC
  TAGTGTATAC TCCTGTATCT TCAGTGCAGA GTTTATCATT GATGCATATG AGAAGTACCA
  Y
  GAGACTCCAG GATCATGGAA CACATGCCAT GGATGCATTT GCTCCACAGT GGTGGACTCT
  GGTCTAACAC ACCTTTCCAA ATTCCCCTGC AACCTGTGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49589139	NES12879962	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29996413					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49589139	NES12879962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766163 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	1216 bp upstream
Rr575767	regulatory region 575767	726 bp proximal
Rr575768	regulatory region 575768	1227 bp proximal