rs29993416 SNP Detail

Summary

• ID
  rs29993416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39867641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAAGAAG AGAGTCACAA
  TTTATAATTA CTAAGAGTGA AGGGTATGTA CCTTGGGCTT TGACACGCTC ACAGAAAATA
  GAAGAACTAA GGTGTCTCTA GTCAGGAGCA TTAGGCCTCA AATACTAGAA ACATAGACAA
  GGACATTGCA CTCTACCCCT ATAATAATTC TTATGGCTTT GCCTTTTAGA AGCCACTTCC
  R
  GAGTTTCAAG TGGTCACTGC CATGGACTGT CCTCCCTTGT GCTGTATTTA CACAAAAGAA
  GTGACCGAGA CTTGCAAAGG GTCAGAGCCC AGTATCTAAT TCATCCTTCC CATTCAACAG
  CATAATTGAG TCACACACTT ACATTCACAG AGCTAATCAA TAAAATGAGT CTGCTTGGCA
  CATGTCCAAG TAGTCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49588293	NES12875338	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29993416					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49588293	NES12875338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39867641 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	1421 bp proximal
Rr575774	regulatory region 575774	1532 bp proximal