rs29993414 SNP Detail

Summary

• ID
  rs29993414
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39868157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT CCTGTTGCTA CATAGTCAAT
  M
  CTGTCTCCCA GTGTCATAGT CACAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45533180	mCV24783818	ABI	CRAMUS_MOUSE	f	SNP		C						A	C
ss49588291	NES12875345	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	C	A		C	A	C		A	C		C
ss134854694	ENSMUSSNP5203104	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
ss320726601	CHEV_3_39712930	CHEVERUD	SCREENING_POP	f	SNP												A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29993414					SNP	C	C	A	A	C	C	A	A	C	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49588291	NES12875345	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39868157 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	905 bp proximal
Rr575774	regulatory region 575774	1016 bp proximal