rs29992513 SNP Detail

Summary

• ID
  rs29992513
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39868188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTTCT GAATTTGTGA
  TAAATTTTAT ACAATGTAAA TGGGATGACA CAAATGAAGT CCAGAGTGGC TTTAATAACC
  CATGCAATGA GTACCTGTCT TTCCTATTCT TATGTACACC CACATTCAAC CATATTTCCA
  ACTTTATCTC CTGTTGCTAC ATAGTCAATA CTGTCTCCCA GTGTCATAGT CACAAACCAC
  M
  GTAACTATAT TATGTGACAA TATAGCCTTT CTACTACAGA GATCATCATT ACTAAAGTAT
  CTTCTTAGTA GTGATACTTT TCAAATAGAA ACACAGTGTA ACTTGTCAAC AAGTAGTGGG
  GCAGAGCTTC AGAAAGGACC CTACTGATAC TCCACTCCCA AAGAGTGCTA ACCCTCACCC
  ATGCCTTGCT TGTCTCCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49588290	NES12875348	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29992513					SNP	A	A	A	A	A	A	A	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49588290	NES12875348	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39868188 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	874 bp proximal
Rr575774	regulatory region 575774	985 bp proximal