rs29992505 SNP Detail

Summary

• ID
  rs29992505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39868772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCACAT TAATAATCAC
  AGGGTCAGGC ATCAGAAGGA TCAGTAGCTG GCTGGTCGAT GGCATGGTGT ACTGGCATCT
  GGGGCTTCCC AATATGAGGA AACTTACATA AATTGTCTCA ATTAGTTATC ATCTGCAGAT
  CCAGACATAT AATATTAACT ATTTGGACAC AAATCTTATT CAAAAAGTAC CACACTTCAA
  Y
  CACACTTGTC TCACGTAGTT GCTTCTGGTA TGTTTGTCCC TAAGTGGGAT GAAGCACAAC
  AGTCAGTGTG CCACAGAAAC TGAAGAATGC CCCTGGGTGT TTGCTTTGCT CACACTTCAC
  ACTCAGAAAT GTTACTGCAG GAGAGAGTAG CAAGCCAGTG ACCCAAGCCT AAGCAATAAC
  CATTTTCTGC AATATAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49588282	NES12875368	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29992505					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49588282	NES12875368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39868772 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	290 bp proximal
Rr575774	regulatory region 575774	401 bp proximal