rs29989450 SNP Detail

Summary

• ID
  rs29989450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36915979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GGATGCTATG CATACTTTAG
  Y
  TATGTCCAGC TAGAGAAGTT CACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss46903564	NES10829699	PERLEGEN	MM_PANEL2	f	SNP					C	T
ss134792449	ENSMUSSNP3437189	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320705820	CHEV_3_36760752	CHEVERUD	SCREENING_POP	f	SNP				C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs29989450					SNP	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46903564	NES10829699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36915979 () rs orientation: forward

Symbol	Name	Function Class
Bltp1	bridge-like lipid transfer protein family member 1	1274 bp upstream
Cpgi13092	CpG island 13092	953 bp proximal
Rr575409	regulatory region 575409	215 bp distal
Rr575410	regulatory region 575410	786 bp proximal
Rr575411	regulatory region 575411	1287 bp proximal
Tssr28876	transcription start site region 28876	165 bp upstream
Tssr28877	transcription start site region 28877	184 bp upstream
Tssr28878	transcription start site region 28878	1272 bp upstream
Tssr28879	transcription start site region 28879	1318 bp upstream
Tssr28880	transcription start site region 28880	1336 bp upstream
Tssr28881	transcription start site region 28881	1349 bp upstream