rs29984961 SNP Detail

Summary

• ID
  rs29984961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36852555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCAATAA AACAGCGTGG ACTGAGCAGG AAAGCCCCAC
  CATAAATGGG GACTGTACTA CCTCCTAGGT GGGGCTGGGA GCCTGGGCAG AATACAGTGA
  R
  TAAGGACAAA GCTAATGTGC TAGCTCAGGC TCTCGTGCGT GCGTGCGTGC GTGCGTGTGC
  ATGTTCTTCC TCCCCCTCGC TCCCTCTCCT CCCCCTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45429915	mCV24849484	ABI	CRAMUS_MOUSE	f	SNP		G	G				A	G
ss46902862	NES10832751	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G		G	A	A		A	A		A
ss134790800	ENSMUSSNP2425203	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320705353	CHEV_3_36697328	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29984961					SNP	G	G	G	A	G	G	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46902862	NES10832751	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36852555 () rs orientation: forward

Symbol	Name	Function Class
Rr575399	regulatory region 575399	950 bp distal
Rr575400	regulatory region 575400	within coordinates