rs29981767 SNP Detail

Summary

• ID
  rs29981767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36742269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTACTAA ACTAGAAGAC
  GGATTAGGAG TGGAGAAGAA GAAATCTTCA TGGAAGAGGG AAATATAGTA ATGAAATACA
  TCCAGTATGT AGAGGGGAAA CTAGGGGAAG GAAGAGAAGC AGAGGAGAGG GCGGCACAGG
  AGAGAGTAGT GGGAGAGGAA AGGATGGTAA AGAAGGTAAG ATACTATGAG GAAGCACATT
  R
  CTTGTAAGCT AACCTACCAC ATTGGCGACA GGACTTTGAA AGAAAGTGGG TCCTATTCTT
  AGGATTCTAC TGAGTATTAA GCTCAGCTGT GCCACTGCAG TTATGAATGT GACCCTGGGC
  TGGCTCTGCT AAGTTGTTGA CTGGCTATGC CACTCTACAT ACTGACTCCA AGGCTGTTCT
  GCTCACCTTT CAACAGTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46900893	NES10807493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29981767					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46900893	NES10807493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36742269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	813 bp proximal
Rr575390	regulatory region 575390	906 bp proximal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	Intron
Tssr33044	transcription start site region 33044	1998 bp downstream