rs29981379 SNP Detail

Summary

• ID
  rs29981379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118456377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGACCCG CCTGCCTCCC GCTGATGTCC CCTCCTCTCC
  CCTCCCCTTC CCTCCCCTCC CCTCCCCTCC TCAGCCCGCC CAGCGCGCTC CTCCCGCCGC
  Y
  GCCCCACAGG ATCGCGTGCT CGCTCGCCCG CCCGCCCGCC GCAATCGGAG AACCCCTCAA
  ATCGGGGGAT GCCGCGGGGC TCGGTGTCCC CCGCAAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss45883922	mCV23181048	ABI	CRAMUS_MOUSE	f	SNP	T	T
ss321924624	CHEV_6_118429434	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs29981379					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118456377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	1095 bp distal
Rr637484	regulatory region 637484	107 bp distal
Rr637485	regulatory region 637485	within coordinates
Rr637486	regulatory region 637486	1093 bp proximal
Rr637487	regulatory region 637487	1254 bp proximal
Tssr62662	transcription start site region 62662	98 bp upstream
Zfp9	zinc finger protein 9	mRNA-UTR