rs29981124 SNP Detail

Summary

• ID
  rs29981124
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105349413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC TGAGGAAAGA GAGCAGCAGC
  M
  CCTTTGATGC CCATGAAGAG GCATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46360338	mCV24347570	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss136917793	ENSMUSSNP205413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323176254	CHEV_9_105374544	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29981124					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105349413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			within coordinates
Tssr86838	transcription start site region 86838			1715 bp downstream
Tssr86839	transcription start site region 86839			1689 bp downstream
Tssr86840	transcription start site region 86840			1674 bp downstream