rs29980661 SNP Detail

Summary

• ID
  rs29980661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50753136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTACTGGG AACCATCTCC
  CAGGGATTTC TGGTTCAGGA TGGCTGAAGC CCAGTGGGTC CTGTGACTCT GGCTTTCTGA
  TGCAAGGGCC ATCTGAGTTC ATTTTGAGAT GCTGAGACCA ACCCCTATCC ATTCAGAAGC
  CATTCGGTGT CCCTTCTTCA ATTAGTTCCT TATCGTGGGG CTGCTGAAAG CATTGTGAGT
  R
  TCCAGAGATG AATTAATGAG GGCTGAAAAG ATCCAGAGAT AGTTACATGC AAAGATGAAA
  AGGGCCCATT AGAATATCGG GATAAATAAA ATCTGCCCTC CGCCCATTTC AGAAGACTTA
  ATGGAACGTC GCAAAGTGTT CAGAAGGAGT TGTTCTGAGG CCTGGAGGGA GGCAGACACC
  GCCATTCCTG TCTGATACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45883548	mCV22334776	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133184537	ENSMUSSNP2695085	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29980661					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50753136 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	within coordinates
Rr630066	regulatory region 630066	124 bp proximal