rs29978838 SNP Detail

Summary

• ID
  rs29978838
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36741444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTGCCAT ATCTTGACAC
  ATAAGACCTT CACACTGATG TCCAGAATGA CAAGGCCTCC AAACCACACC CACCACTCTC
  CTTCTCACAC CCTATGTTCC AACCAGACTC AGCTGCCATG GTTCTGAAAC ATCCCTGGCA
  TTTTGAGGGA CGGAGCATGA AATAATTAGC TACTGCATGC CATCCTAAGA ATCCTTCCAG
  S
  CCATATCGGT TTCTTTAATT TCTTCACAAA CAAATAAGCT TGTCTCCTGC TCTCCTTGTC
  TCTTTACAGC TCTATTTTCA TACTTTTTTT TATTAATACT CATTTTCTTC AGATTGATAG
  CATCATTGTC CAGGTCCGGC ATCTTTGTTG CTTTCCCTCA CAGAGGGAAC CTTTTTTCCT
  TGTCTTTGTG GTTGTTGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46900860	NES10807672	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29978838					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46900860	NES10807672	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36741444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	1638 bp proximal
Rr575390	regulatory region 575390	1731 bp proximal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	Intron