rs29977429 SNP Detail

Summary

• ID
  rs29977429
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34075581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA GAATGATAAG TATACTTTTT
  W
  AAATTTTGTT TTGTAAATTT TGATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45383913	mCV22842365	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss134762069	ENSMUSSNP2151704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29977429					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34075581 () rs orientation: forward

Symbol	Name	Function Class
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	1550 bp upstream
Rr575095	regulatory region 575095	1645 bp distal
Rr575096	regulatory region 575096	1314 bp distal
Rr575097	regulatory region 575097	208 bp distal
Tssr28785	transcription start site region 28785	1549 bp downstream
Tssr28786	transcription start site region 28786	1516 bp downstream
Tssr28787	transcription start site region 28787	1506 bp downstream
Tssr28788	transcription start site region 28788	1493 bp downstream
Tssr28789	transcription start site region 28789	1469 bp downstream
Tssr28790	transcription start site region 28790	1350 bp downstream
Tssr28791	transcription start site region 28791	1322 bp downstream
Tssr32968	transcription start site region 32968	1620 bp upstream