rs29975407 SNP Detail

Summary

• ID
  rs29975407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103241047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGTTAGTTC TGTCGTAGTT TCTAGTATGT TTGCCAGTTT GTTCTGCTAT CACCTCTAAT
  TCTCCGTGTT TTCATGGTTT CAAAAATATA ACATTGGCTT CATTTCCTAT TTTCTTTTAT
  TCTGACTCCT GTGTCATACT CTGAACTTTT TTTTTTTTTT TTTGGTACAT AAAATATGTG
  ACCTTTTATG CCTGCACTTT CTTCACTTAG TCTATAGGTA TGTCTATTAT AACTTAATTA
  TTTCTATGGC TGCATAATAT TTCATTGTAT AGAGTTCTCT TTCTTTTTTC TTCTTTTGAA
  R
  AAAGGGACTT GAAGTGTAGT CTGGTCTAGA GTCCACTGTG TAGCTCAGGC TGGCTCAGAC
  TAATTTTGTA CTTCACGCTC ACATGGTAGG ATTAAAGGCA GGCACCCCAA GCCTGTTTCT
  GACTTTGTAT CTATGGTGAT AGTGCTGAGA GTCTTAGACT GTACTATGTG TCTTCATGTA
  TTAGTTGATG GCTATTTCAA TTTCTACTTT TTGCCTGTAA GGAAATAATA GTAATACAAG
  CTTCTCTCTA TAATAGTGGT TCTCCCCCTT CTACCCTTTA AAACACCTCC TCATGTTGTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45383543	mCV24543812	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29975407					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103241047 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			within coordinates
Rr582347	regulatory region 582347			1847 bp proximal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant