rs29974860 SNP Detail

Summary

• ID
  rs29974860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57754104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GCGACTCCCC AGATTTTTTT
  W
  AATCACCCTT AAACCATCCC CTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45383792	mCV22719345	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135204816	ENSMUSSNP1913148	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss320781806	CHEV_3_57650605	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29974860					SNP	A	T	?	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57754104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13199	CpG island 13199	153 bp proximal
Gm66316	predicted gene, 66316	1244 bp upstream
Pfn2	profilin 2	Intron
Rr577167	regulatory region 577167	816 bp distal
Rr577168	regulatory region 577168	315 bp distal
Rr577169	regulatory region 577169	452 bp proximal
Rr577170	regulatory region 577170	1386 bp proximal
Rr577171	regulatory region 577171	1431 bp proximal
Tssr33340	transcription start site region 33340	795 bp downstream
Tssr33341	transcription start site region 33341	1007 bp downstream
Tssr33342	transcription start site region 33342	1041 bp downstream
Tssr33343	transcription start site region 33343	1397 bp downstream