rs29974030 SNP Detail

Summary

• ID
  rs29974030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18437082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCTTT CCAAGTTGAT
  TTTTGGTCGT GATGTTTCAT CTCAGCAGTA TAAATCCCTA GAACAAAAGG TGCCTGCCTT
  TTCCTCCATA GCAAAGCCCT CTCCTCTCCC GTGTTTTCAT AAGTTTTATT TAGTGATCTC
  CCTGCCTTCT TAAGAATGTA ACCTCATAGC TGGGCATGGT GGCACACGCC TTTAATCCCA
  K
  CACTCGGGAG GAAGAGGCAG GTGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAAAGTG
  AGTTCTAGGA CAGCCAGGGC TATACAGAGA AACTCTGTCT CAAAAAACAA GTAACCCCAT
  GAAGGCAAAG ACTGAGAATC ACTTCCTATG TCCCCCCAAA CCTATAATAA ATAGGCTGGC
  ACATGGTTGT GTTTAATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45881173	mCV23958644	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss133034811	ENSMUSSNP5270834	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29974030					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18437082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			746 bp downstream
Rr626924	regulatory region 626924			370 bp distal