rs29973461 SNP Detail

Summary

• ID
  rs29973461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69769000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACAGCTCT CTTTCCTTTC AGCTCTTGTA TTTAGTGCTT
  TTATTTCTTA ACCACTTTAT GTCGGTCACA TTTCTTATCT CTTGGCTTCT CCTGACACAC
  K
  TTGCAGTGTT TGCCAGGCAG ACCTGATCAC TTACAGCTTT AGAGGGGGAA ATAGAAGCCC
  TGCGAAATGA CTGAGGGATG ACCAATGTTT TTCGTACTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45383284	mCV23153873	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss320793941	CHEV_3_69665589	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29973461					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69769000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	246 bp distal
Rr578229	regulatory region 578229	1756 bp distal
Rr578230	regulatory region 578230	1237 bp distal
Rr578231	regulatory region 578231	1383 bp distal
Rr578232	regulatory region 578232	1334 bp distal
Rr578233	regulatory region 578233	333 bp distal
Rr578234	regulatory region 578234	within coordinates
Sptssb	serine palmitoyltransferase, small subunit B	1727 bp upstream
Tssr903	transcription start site region 903	1803 bp upstream
Tssr33558	transcription start site region 33558	1766 bp upstream
Tssr33559	transcription start site region 33559	272 bp upstream