rs29973455 SNP Detail

Summary

• ID
  rs29973455
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26692297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA TAGGAGCTGA TAGCTGCCAC
  S
  CTCTGGCTTT TATCATTTGT GGTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45383274	mCV24231329	ABI	CRAMUS_MOUSE	f	SNP		C	C					G
ss51442544	NES14434484	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	C	C		G	G	G	G		G	C	C	G		G
ss134696937	ENSMUSSNP6444214	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320687944	CHEV_3_26537070	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29973455					SNP	C	C	C	C	G	C	C	G	G	G	G	G	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442544	NES14434484	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26692297 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	594 bp upstream
Gm65438	predicted gene, 65438	660 bp downstream
Rr574324	regulatory region 574324	1065 bp proximal
Rr574325	regulatory region 574325	1299 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	511 bp downstream
Tssr28598	transcription start site region 28598	488 bp downstream