rs29971241 SNP Detail

Summary

• ID
  rs29971241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108423405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACATGCTT CTGTGGGCTG AAGCTCAGCG AAGTGACACT
  TTCACCCCAT GTGGTCTTGA CTGGGGCTGA ATTCATCAGG AAGTTGGGAC TAGAGTCGTC
  R
  GCATGGCCAC TTGTTTGGCT GTGAGGGTTG GTTCTCAGCT TGAGCTGGAG GGTACTGGTT
  TTCGGTATGT GGGGCGCTTC TTTCTATAAC ATGGTGGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45880147	mCV23380952	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51814124	NES14768963	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	A	G	A	A	G	A
ss133502580	ENSMUSSNP5390638	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29971241					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814124	NES14768963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108423405 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	1054 bp distal
Rr636108	regulatory region 636108	470 bp proximal
Rr636109	regulatory region 636109	816 bp proximal