rs29970741 SNP Detail

Summary

• ID
  rs29970741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108481221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACGGTAAT TAATGAGAAC AGGAGAGACA GCAGGATGTG
  TGACAGTTGT TACATGTGCA CAAAATGCTA ATTTGCCCCA AGAAGCCACG TTTTTAGCTT
  Y
  TATCAACCTT ATGTACCTTT GTGCCCATTT CTTTTATTTT CTGTGCATGA GGTATACGTG
  GTCACATGTG TGTGAGCACA CGTGTTTATG CTTGTGTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45882225	mCV24652093	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51813048	NES14767889	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	T		C	T	C	C		T
ss133503708	ENSMUSSNP2691855	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321892873	CHEV_6_108454254	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29970741					SNP	T	T	C	C	C	T	C	T	C	C	T	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813048	NES14767889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108481221 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636122	regulatory region 636122	213 bp distal