rs29970535 SNP Detail

Summary

• ID
  rs29970535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152515333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT AGATCAGTAG ATCTGGATTT
  Y
  TGGGGAGTGG GGTGGGTTCT GTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45382540	mCV27576034	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss147971422	ENSMUSSNP6966638	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320563045	CHEV_2_152499149	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29970535					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152515333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567420	regulatory region 567420			1634 bp distal
Rr567421	regulatory region 567421			1583 bp distal
Rr567422	regulatory region 567422			755 bp proximal
Rr567423	regulatory region 567423			1869 bp proximal