rs29970442 SNP Detail

Summary

• ID
  rs29970442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109504139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGCGGG TATCTCCATA
  ACAACTGGTT TACATTACAT TCATTCTCGG CTCCTCTGCT TCGCTGCGTA AGCTAAGCTG
  AGGGTAGGCA AAGGAAGACT CTAGTGAAGA GATACCTGGA GCTAGCGCCT CCCTATGTTG
  GGGGATATGG TTAACTCTGG ACTTACAGCT CATTTCTAGA GATTTCCGGA CATCTGCCTA
  S
  GATCTCAGCC TAAGGGCCTT GCCCTTCCCC CACTGCACCC CTCCCCCACC GCATCCGCCT
  TTCAAGAGAT TATTTTTACA CGCCCGCGCA CACGCGCACA CACATACGGG GGGAGGAGGT
  TTATTTTATT GTGACTCTTC TTGAAGTTCA TCTCTTTCCT TCCAACTTAC TTTCCTCCAA
  CACGTGACCT CTCCACTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45382275	mCV23782083	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss147203216	ENSMUSSNP3683725	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29970442					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109504139 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	906 bp upstream
Cpgi12032	CpG island 12032	216 bp proximal
Gm20638	predicted gene 20638	within coordinates
Gm45346	predicted gene 45346	within coordinates
Rr562477	regulatory region 562477	416 bp proximal
Rr562478	regulatory region 562478	917 bp proximal
Rr562479	regulatory region 562479	1210 bp proximal
Rr562480	regulatory region 562480	1613 bp proximal