rs29970211 SNP Detail

Summary

• ID
  rs29970211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGGCCCAA CATTGATTGG GACGGCAGGT CGCAACACTT
  GTTCTGCAAG AAAAGGCTAC GTCCTACTTA CTGCCAGCCT GGATGCAGGT TGGGTAGCCC
  W
  TTAATAGAGT TTCCTTAATC TCGTGTGGGG AGTGGGACGT TCCATTTCCA GAGCAGCTTT
  TTTGGGCCGC CGCTATGAGA GAAGGGGCTG GGGGTGGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45382080	mCV22674878	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss147552337	ENSMUSSNP5946276	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29970211					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966780 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1178 bp upstream
Cpgi12233	CpG island 12233	1643 bp distal
Cpgi12234	CpG island 12234	904 bp distal
Cpgi12235	CpG island 12235	168 bp proximal
Gm74510	predicted gene, 74510	1357 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	313 bp distal
Rr564650	regulatory region 564650	1557 bp distal
Rr564651	regulatory region 564651	688 bp proximal
Rr564652	regulatory region 564652	1293 bp proximal
Rr564653	regulatory region 564653	1368 bp proximal
Tssr20042	transcription start site region 20042	1170 bp upstream