rs29969733 SNP Detail

Summary

• ID
  rs29969733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTCTG TGCTGGTGGT
  GAATGAAACA GATAAATCTC ATAGGATTCT TCATTTTAGG AAGACAGACA ATAAAAAGTT
  TTTAAGTGCG TGCAGAATTT GTACAAGATG ATTCAAACTG GGGTAATAAA AGATAACCAA
  GGACTCCTAA GAACCAGCGG AGGGATGCAA CTTAAATGCA GTCGTGGATC ATCATTATAT
  R
  ATCCATCCCT TCTCTCAATC CTTGAGTAGC TTGCATTCCT GACCATGGCC ATCATCTGAT
  GGCCTGACCT TGCAAGATTG GCTCCACTCT TCTCCACACC CCTTCTCCCA TGGCCCTCTG
  GCTACAGCCA TAGTAACCGG CTTTCTATTG CTTACAGACA TAAAGGTCTA TGAGCTATTC
  TTCTCGGAGT ACCTTCCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45382183	mCV23160865	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147988441	ENSMUSSNP5962107	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29969733					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	382 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	916 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	859 bp distal
Rr567589	regulatory region 567589	686 bp distal
Rr567590	regulatory region 567590	297 bp distal
Tssr20880	transcription start site region 20880	1348 bp downstream
Tssr20881	transcription start site region 20881	1331 bp downstream
Tssr20882	transcription start site region 20882	808 bp downstream
Tssr20883	transcription start site region 20883	671 bp downstream
Tssr20884	transcription start site region 20884	656 bp downstream
Tssr26895	transcription start site region 26895	920 bp upstream
Tssr26896	transcription start site region 26896	880 bp upstream
Tssr26897	transcription start site region 26897	863 bp upstream
Tssr26898	transcription start site region 26898	774 bp upstream
Tssr26899	transcription start site region 26899	550 bp upstream