rs29968784 SNP Detail

Summary

• ID
  rs29968784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCCCGGT CCTGGCTTGA
  GCCCGCGCCC AGCCTCCCTT CGCTGCACTG TCACTGCAGA CGCGCGCTAG GTACAAGCTG
  CTCACGCCGG CTGCAGGCAC CCAGACCTGG GAGCTAACAA CCAAGGCTCC TAGTGAAGCC
  CCTGCGCCCC CGCCACTGCC CCATCCCGAG CCCGCTGTAG CTGCGATGGC AGGGGCACTG
  R
  AGAAGCTGCG TGTGGCTGTG GGCTGGCCCG GGCTGCCGCG CCCCTTCGCG CTCCGCTCTC
  TGGAGGCTGG GGGAGGTTGG GGGACCCCGA GGGAATGGCG GGGACTGAAG TCGTGCTTCC
  TCTAAGTATG TTTTCTCTGA CAGACTGGAA AGCTCCCCCC AAAGCACATC AAGAGATGGA
  GACGCCAATA CCTCAGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45881209	mCV25430915	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss47928736	NES11637721	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		A	G	G	A	A	G	A	A	G
ss133228472	ENSMUSSNP1066499	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29968784					SNP	A	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928736	NES11637721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			within coordinates
Gm66600	predicted gene, 66600			within coordinates
Pde1c	phosphodiesterase 1C			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			338 bp distal
Rr631076	regulatory region 631076			122 bp proximal
Tssr1858	transcription start site region 1858			180 bp downstream
Tssr61134	transcription start site region 61134			39 bp upstream
Tssr61135	transcription start site region 61135			within coordinates
Tssr61136	transcription start site region 61136			137 bp downstream
Tssr61137	transcription start site region 61137			212 bp downstream