rs29968665 SNP Detail

Summary

• ID
  rs29968665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93008219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCTTGGGA GGGGCTGCCA GTTTGAGGTG TCTGGGGTGG GGGTGGGGGT GGGGGTCTTG
  ACTGCAGGGT CAGAGGTCAG GAAGGCTCTT CAGAGAAAAT AATATCCACC CTGGCATAAA
  AAGAACGTGA ACAAGAAATG CTAATTAAAG GTGGAGATGA GCTGGGCAGA GGACAGCAAG
  CATGGAGACA GAGGGAGACA CAGAGGGGTC CTGGCAATGA CATCTGCTCT GCTCTCTCCT
  CCACCGCAGT AGAAGAGGCT GTGATGGGTT CCACACACTG TGTGTGTGTG TGTGTGTGTG
  Y
  GCGCGCGCGC GGCGTGCGTG CGTGCGTGCG TGCGTGAGTG CACTGTGTGT GCACTTTGTG
  TGTGTGTGTA CTGTGTGTGC ACTGTGTGTG CGCTTTGTGT GTGTGTGTAC TGTGTGTGCA
  CTTTGTGTGT GTGCACTTTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  GTGCATTCAT TCCTTCATTT GTTTTACATG GCACCCTTTA AACTCTACCA CAAATCTTAC
  AAAGCAAACC GGCAGATCCG TGATGGCCCA GACCCTGAGG CCACGATGTA CTGCTGTACA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45382627	mCV25081183	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29968665					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93008219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11941	CpG island 11941	within coordinates
Gm32683	predicted gene, 32683	1851 bp upstream
Rr561105	regulatory region 561105	within coordinates
Rr561106	regulatory region 561106	1571 bp proximal
Rr561107	regulatory region 561107	1721 bp proximal