rs29968192 SNP Detail

Summary

• ID
  rs29968192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8947494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT GACTGTCATT GCTATGTTTG
  Y
  TGGGTGTCCT GGGCCCACTA AGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45880515	mCV24757286	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132976308	ENSMUSSNP2779817	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321738439	CHEV_6_8897494	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29968192					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8947494 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	937 bp upstream
Rr626455	regulatory region 626455	630 bp proximal
Rr626456	regulatory region 626456	1135 bp proximal
Rr626457	regulatory region 626457	1692 bp proximal
Tssr54925	transcription start site region 54925	933 bp upstream
Tssr54926	transcription start site region 54926	1076 bp upstream
Tssr54927	transcription start site region 54927	1114 bp upstream
Tssr54928	transcription start site region 54928	1421 bp upstream
Tssr54929	transcription start site region 54929	1457 bp upstream
Tssr54930	transcription start site region 54930	1558 bp upstream