rs29967950 SNP Detail

Summary

• ID
  rs29967950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA CAGAAGACAG AAAAGCCAAG
  Y
  CTGTACTGTC CAACAGGCAA GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45882191	mCV23990286	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss48141278	NES11826482	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T		C	T	T	T	C
ss133960841	ENSMUSSNP5173037	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs29967950					SNP	C	C	C	T	C	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141278	NES11826482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcat1	branched chain aminotransferase 1, cytosolic			Intron
				mRNA-UTR
Gm15687	predicted gene 15687			72 bp upstream
Gm26666	predicted gene, 26666			94 bp upstream
Rr641039	regulatory region 641039			1798 bp distal
Rr641040	regulatory region 641040			within coordinates
Rr641041	regulatory region 641041			1337 bp proximal
Tssr2055	transcription start site region 2055			1582 bp downstream
Tssr59519	transcription start site region 59519			1073 bp upstream
Tssr64030	transcription start site region 64030			40 bp downstream
Tssr64031	transcription start site region 64031			65 bp downstream
Tssr64032	transcription start site region 64032			140 bp downstream
Tssr64033	transcription start site region 64033			171 bp downstream
Tssr64034	transcription start site region 64034			199 bp downstream
Tssr64035	transcription start site region 64035			260 bp downstream
Tssr64036	transcription start site region 64036			1120 bp downstream
Tssr64037	transcription start site region 64037			1136 bp downstream
Tssr64038	transcription start site region 64038			1191 bp downstream
Tssr64039	transcription start site region 64039			1211 bp downstream
Tssr64040	transcription start site region 64040			1230 bp downstream
Tssr64041	transcription start site region 64041			1245 bp downstream
Tssr64042	transcription start site region 64042			1265 bp downstream
Tssr64043	transcription start site region 64043			1284 bp downstream
Tssr64044	transcription start site region 64044			1344 bp downstream
Tssr64045	transcription start site region 64045			1374 bp downstream