rs29967703 SNP Detail

Summary

• ID
  rs29967703
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCTCA TTTCCCAAGA
  GTATGAAGAT GCCAGGCCAT GACAAGTCAT TTCAAAACAG CAGAAACTCT GTAAAACTAT
  AGAGGTCAGA CCTCTTCAAA TGGGAGTTAA CTCTGTGGTC AGAAATCTGC CAGACCCTTC
  TCCTCCATTC GCTCCTGGTG AACAGTTTGG AGCAGAAGAA GAGCAGAAAT AACAACATAC
  M
  CGGGTTGGGA TTTTTTGCTT TTGTTTTTTG TTTGCTTGTT TTTTTTTTTT TTTTTAACTT
  TCCAGTGGCA AGATACATAT TCCCTCCCTG CCTGCCTGAA TCTTGCCTCT AGGAGCTAGG
  GACTCTAAAC GGACCTTGCC TTAGGTCTGT CTCCCTGGAG CTCTCTCCTC TCCTCTCAGC
  TTTTGTCTTC CTATCCCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45879835	mCV25430899	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss133228451	ENSMUSSNP1015408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29967703					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			357 bp proximal
Gm66600	predicted gene, 66600			556 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			277 bp proximal
Rr631076	regulatory region 631076			1026 bp proximal
Tssr1858	transcription start site region 1858			1084 bp downstream
Tssr61134	transcription start site region 61134			854 bp downstream
Tssr61135	transcription start site region 61135			875 bp downstream
Tssr61136	transcription start site region 61136			1041 bp downstream
Tssr61137	transcription start site region 61137			1116 bp downstream