rs29966718 SNP Detail

Summary

• ID
  rs29966718
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9148911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAAAATAT AAAATAAAAA GACAAGTGAA TATTAATTTT
  GGCACTTTTA CTAGCATATA ATCATTGTTA ACAGTTTACC CAACCCCTAT CCTGTTTTTG
  K
  CACCTCATGA TACTACCCTT TCTCTAGGCC TTGGGTTTGG GCAAGGTAAG TTCCAGGCTG
  CTGTTCAAGC TCCACAACTT TACCAAACAT GTGAGTTTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45879372	mCV23996066	ABI	CRAMUS_MOUSE	f	SNP		G	G					T		G
ss47787356	NES11665878	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	T	G	T		G	G	T	G		G	G	G	G		T
ss132977257	ENSMUSSNP645911	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321738948	CHEV_6_9098911	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29966718					SNP	G	G	G	T	T	G	T	T	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787356	NES11665878	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9148911 () rs orientation: forward

Symbol	Name	Function Class
Gm35736	predicted gene, 35736	1833 bp downstream
Nxph1	neurexophilin 1	Intron
Rr626466	regulatory region 626466	951 bp proximal