rs29966308 SNP Detail

Summary

• ID
  rs29966308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17487995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGCTGT GGAGAGAAAG
  CTGACGGTGT AGCAGAACGC TTGGCATGTG GTAAGCACGC AGTGCACATT TTTGTTGTTT
  TTACTATTAT ATGGCTTATA CCTCTTCCAG TAATTTAGCC TATTGAAGCT TTCCTTTGCT
  CTCTGGTATT AGTGTGGCTT TCTGGCTTCG TTACACATCC CCTGAAATCC TATATCCTCA
  Y
  TCAGATACCT CTACATGGAT CCCAAAGACC ACCATGTCCT CAACTGTCTG TGCTAGGTTT
  CTTCTCTTTC ATGCACGCGA AGCGGTAGCC ACGACAGGTT GAATGTATCT TATCTTAAAG
  GTAAGACATC TTAGCTTAAT GCTGTTCTTT TGAATTTCTT GCTGGCCTCA GTTTGCATGC
  TCTTCTTTGG TTATTTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45880389	mCV23976287	ABI	CRAMUS_MOUSE	f	SNP		T						C		C
ss47812522	NES11721574	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	T	C	C	C	C
ss133015349	ENSMUSSNP4985807	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29966308					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47812522	NES11721574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17487995 () rs orientation: forward

Symbol	Name	Function Class
Met	met proto-oncogene, receptor tyrosine kinase	Intron
Rr626803	regulatory region 626803	517 bp proximal