rs29962019 SNP Detail

Summary

• ID
  rs29962019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:87183994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAGTTTT ATAATGATAG CTCTTCACAA TTAAACCTTA
  CCTGTAAAGT TGAAGCTAAT TTGTTGGTAA GTCTATGAAT GGAATATTTA ACATAAATTC
  Y
  AATTCATTCA GTGTTACATT CTATTAAATT ATGTATAATA GTCACTGTCA AAAAAGAACT
  CTGACATGAT TATTATAACT GGCTCAGTTA GAAGATCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45381451	mCV25125757	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146877440	ENSMUSSNP6344583	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320381634	CHEV_2_87193807	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29962019					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:87183994 () rs orientation: forward

Symbol	Name	Function Class
Or12a1-ps1	olfactory receptor family 12 subfamily A member 1, pseudogene 1	178 bp downstream