rs29961981 SNP Detail

Summary

• ID
  rs29961981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40195049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTCTGA CACCAAATGC
  ATAAATCGGT TTCAATTCTA CTTTCCACTA TGTTTAAAAT AGTTGATGGG TCATTTCTAG
  CAGTAAGTTA TTTCATAAAG GTTTTTACAG CTTGCTAGAG CTACTACCAG GTGGGAAGAA
  GTATGGTGTT GGGGGATTCA GGACAATTTA CACTGATGGA ACGTCAGTCC TTCCTAAGCG
  Y
  GTGCAAAGAT GTAGAGACCT GGGAGAAATT AATATGAATA TCAAAATTGA TAAAACCAAG
  CACAGTTTGT ACAAATGACA CCCATGTCTT ATTTCTTGAA GGAGCTCTGC ATGGTAGTTT
  GGGAAAATGA GTGAAAACAT CCTCTCATCA GCATGGGCTA AAGGTCAAAG TAGAGAAGAC
  TAATAAGAGG CAGACAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45418404	mCV24787969	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss49586101	NES12856969	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	C	C	T	C	C	C
ss134857636	ENSMUSSNP4532319	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29961981					SNP	T	T	C	T	T	T	T	T	C	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586101	NES12856969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40195049 () rs orientation: forward

Symbol	Name	Function Class
Rr575799	regulatory region 575799	1908 bp distal