rs29961553 SNP Detail

Summary

• ID
  rs29961553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57511347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGTAA GTGTTACTCA
  ACTCTGTGAA GGGGGTGGGT TGATGTAGAC AAGGAAAAAG AGACTCGGAT TGCAAGAAAA
  ACAATTATAA ACAAGAGCCC ATTATCCAAA GCTTCCTATT TTATGACATT TGTCATACAG
  TGTGGTGAGC TGGTTTCCAA TTTCCACAAG TTCCAACACA CACTAGAAGG GCAACACAGC
  Y
  CCTTCCGCCA AGCCCTGCAG ATCTCGATCT CAAGAGAGCC CCAGGTTTCC TCACCAGGGC
  ACAGGTCCAG CAGAGGCTAC ATCTGCTCTG CCGGGTTGAC ATGCACATTG GGGGTTGGGG
  GCTTCGCAGT TTCTATTCCT GCAGCTCCTA CAACGAAAAC CGGTGGAGCT TTTGAGAGTC
  GAAATTTCCT AGCTATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45879027	mCV25134573	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29961553					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57511347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45193	predicted gene 45193			within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)			Intron
				Noncoding-Transcript-Variant
Rr399669	regulatory region 399669			1055 bp upstream
Rr631141	regulatory region 631141			within coordinates
Rr631142	regulatory region 631142			1054 bp proximal
Tssr61156	transcription start site region 61156			1006 bp downstream
Tssr61157	transcription start site region 61157			1048 bp downstream
Tssr61158	transcription start site region 61158			1060 bp downstream
Tssr61159	transcription start site region 61159			1115 bp downstream
Tssr61160	transcription start site region 61160			1137 bp downstream